Tools

Vectors

Multiscale Graph Correlation (MGC) is a framework for universally consistent testing high-dimensional and non-Euclidean data.

knorR is a highly optimized and fast library for computing k-means in parallel with accelerations for Non-Uniform Memory Access ('NUMA') architectures.

Randomer Forest is an improved random forest algorithm that achieves better accuracy and scaling than previous implementations on a standard suite of >100 benchmark problems.

Randomer Forest

FlashX are big data analytics tools that perform data analytics in the form of graphs and matrices!

FlashX

Linear Optimal Low-rank (LOL) projection for improved classification performance in high-dimensional classification tasks

meda implements the top 10 analyses/visualizations we recommend for any matrix valued data.

Graphs

FlashX are big data analytics tools that perform data analytics in the form of graphs and matrices!

FlashGraph

Utilities and algorithms designed for processing and analysis of graphs with specialized graph statistical algorithms

Images

ndmg combines diffusion and functional MRI data from individuals to estimate connectome reliably and scalably, and compare populations.

ndmg

ndreg is a Python package that performs non-linear affine and deformable image registration.

ndreg

oopsi is a tool for performing model-based spike train inference from calcium imaging. OOPSI has now been subsumed by CaImAn.

oopsi

Synapse detection from serial electron microscopy data. VESICLE has now been subsumed by VESICLE-CNN-2.

VESICLE

SynapseAnalysis (PSD) is a framework to evaluate synaptic antibodies for fluorescence array tomography (AT)

SynapseAnalysis