BRAIN 2016

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# NeuroData 2016

slides: <http://neurox.io/nd2016>

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## things to celebrate

- people
- manuscripts
- events
- grants
- tools
- companies

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# new people

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##eric

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##leo

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##gui

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##youjin

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##jesse

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##cencheng

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##heather

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##james

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##zeinab

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##vikram

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# old people and some manuscripts

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## cencheng's [manifold matching](https://arxiv.org/abs/1412.4098)

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## da's [flasheigen](https://arxiv.org/abs/1602.01421), [flashmatrix](https://arxiv.org/abs/1604.06414v1), and [flash matrix multiplication](https://arxiv.org/abs/1602.02864)

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## tyler's [randomer forests](https://arxiv.org/abs/1506.03410)

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## greg's [science in the cloud](https://arxiv.org/abs/1610.08484)

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## runze's [law of large graphs](https://arxiv.org/abs/1609.01672)

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## disa's [k-means](https://arxiv.org/abs/1606.08905)

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## shaojie's [kalman filter in high dimensions](https://arxiv.org/abs/1509.03927)

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## kwame's [LDDMM](https://arxiv.org/abs/1605.02060) on clarity and [MI-LDDMM](https://arxiv.org/abs/1612.00356)

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### our "[to the cloud!](http://dx.doi.org/10.1016/j.neuron.2016.10.033)" and our workshop report on "[grand challenges for global brain sciences](https://arxiv.org/abs/1608.06548)"

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# events

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## SfN

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## NIPS, Supercomputing, SPIE, Stanford Reproducability, Janelia Hackathons

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# funding

1. "brainlab continuous integration"
1. FlashX
1. NSF BRAIN workshop
1. SIMPLEX Phase II + FunLOL
1. TRA
1. Kavli $100k
1. DARPA D3M

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# tools

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## ndstore

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## ndviz

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## ndreg

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## ndmg

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## randomer forest

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# companies

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## d8alab

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## flashx

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## NuCo

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# lessons

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![alignment](https://upload.wikimedia.org/wikipedia/commons/thumb/f/fd/3D_Vector.svg/300px-3D_Vector.svg.png)

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![structure](http://image.made-in-china.com/4f0j00iTEaMvttoQeL/Steel-Space-Frame.jpg)

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![full body yes](https://choosepleasure.files.wordpress.com/2016/04/image2.jpg)

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# vision for 2017

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![alignment](http://mathinsight.org/media/applet/image/large/vector_3d_coordinates.png)

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![new structure](https://static.dezeen.com/uploads/2008/01/008201c856fdd72304108063f552.jpg)

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![science](http://img02.deviantart.net/4719/i/2011/252/a/e/beaker_doing_science_by_xbonesoox-d49bz4h.png)

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# logistics for 2017

1. hire for company
1. quarterly goals
1. grant engagement
1. semi-annual retreats
1. weekly subgroup meetings
1. monthly check-ins*
1. weekly all-hands lunches*
1. weekly hackernoons*
1. daily stand-ups*

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## data science in a slide

| task | algorithm | implementation | pipeline | science | pro |
| :--- | :---      | :---           | :---     | :---   |:---
| EDA  |  standards| R --> FlashX   | meda     | synaptomes | 2017
| hypothesis  | MGC | R --> FlashX | ? | mind/brain | 2017
| clustering | 2017 | 2017 | 2017 | synaptomes+ | 2017
| classification | LOL, RerF | FlashX, 2017 | ? | ? | 2017
| regression | 2017 | 2017 | ? | 2017 | ?
| time-series | Mr. Sid |  --> FlashX | ? | ? | ?
| registration | SGM,LDM | R,Python+ITK | A1Hr | ? | 2017
| control | discrim. | 2017 | ? | connectomes | ?

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## reference algorithms

| task | low-d | high-d | 1-graph | n-graphs | shapes |
| :--- | :---      | :---           | :---     | :---   |:---
| EDA  |  meda| meda2  | gx     | gx 2.0 | ?
| hypothesis  | MGC | MGC | 2017 | cep | MGC
| clustering | 2017 | 2017 | ASE_GMM | Semipar | ?
| classification | RerF | LOL,RerF | VN | ss | ?
| regression | 2017 | 2017 | MGC+ | MGC+ | ?
| time-series | KFS | Mr. Sid | ? | ? | ?
| registration | ? | ? | ? | SGM | LDDMM
| control | discrim. | 2017 | ? | connectomes | ?

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## reference pipelines

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## Acknowledgments

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# Questions?

[jovo@jhu.edu](mailto:jovo@jhu.edu) |  [neurodata.io](http://neurodata.io)