Neurodata Image Registration

Neurodata's open-source Python package that performs affine and deformable (LDDMM) image registration.

An example jupyter notebook from A. Branch et al. (2019) can be found here.

Publications
  1. A. Branch et al. An optimized protocol for iDISCO+ rat brain clearing, imaging, and analysis. bioRxiv, 2019.
  2. D. J. Tward et al. Diffeomorphic registration with intensity transformation and missing data: Application to 3D digital pathology of Alzheimer{\textquoteright}s disease. bioRxiv, 2019.
  3. D. Tward and M. Miller. EM-LDDMM for 3D to 2D registration. bioRxiv, 2019.
  4. K. S. Kutten et al. A Diffeomorphic Approach to Multimodal Registration with Mutual Information: Applications to CLARITY Mouse Brain Images. MICCAI, 2016.
  5. K. S. Kutten et al. Deformably Registering and Annotating Whole CLARITY Brains to an Atlas via Masked LDDMM. SPIE Europe, 2016.
Slides
  1. NeuroData Tools