NeuroData Image Registration

NeuroData's open-source Python package that performs affine and deformable (LDDMM) image registration.

A demonstrative jupyter notebook can be found here.

  1. A. Branch et al. An optimized protocol for iDISCO+ rat brain clearing, imaging, and analysis. bioRxiv, 2019.
  2. D. J. Tward et al. Diffeomorphic registration with intensity transformation and missing data: Application to 3D digital pathology of Alzheimer{\textquoteright}s disease. bioRxiv, 2019.
  3. D. Tward and M. Miller. EM-LDDMM for 3D to 2D registration. bioRxiv, 2019.
  4. K. S. Kutten et al. A Diffeomorphic Approach to Multimodal Registration with Mutual Information: Applications to CLARITY Mouse Brain Images. MICCAI, 2017.
  5. K. S. Kutten et al. Deformably Registering and Annotating Whole CLARITY Brains to an Atlas via Masked LDDMM. SPIE Europe, 2016.