Zebromes

About

A joint project between NeuroData and Florian Engert's lab. This project aims to create and host an open-source atlas of the zebrafish brain, as well as generate a realistic multiscale circuit model of the larval zebrafish brain. The model will span spatial ranges from the nanoscale at the synaptic level, to local microcircuits, to inter-area connectivity. The ultimate goal will be to infer algorithms defining behavior from behavioral assays.

Data

Tools

Computational toolbox for large scale Calcium Imaging Analysis

CalmAn

ndreg is a Python package that performs non-linear affine and deformable image registration.

ndreg

Publications

People on project

Ben Falk
Joshua Vogelstein
Florian Engert
Owen Randlett
Onyeka Nnaemeka

Funding

Sensorimotor processing, decision making, and internal states: towards a realistic multiscale circuit model of the larval zebrafish brain