Zebromes

About

A joint project between NeuroData and Florian Engert's lab. This project aims to create and host an open-source atlas of the zebrafish brain, as well as generate a realistic multiscale circuit model of the larval zebrafish brain. The model will span spatial ranges from the nanoscale at the synaptic level, to local microcircuits, to inter-area connectivity. The ultimate goal will be to infer algorithms defining behavior from behavioral assays.

Data

Tools

CalmAn

Computational toolbox for large scale Calcium Imaging Analysis

ndreg

ndreg is a Python package that performs non-linear affine and deformable image registration.

ndex

ndex allows exchange of large image volumes with NeuroData

ndwebtools

ndwebtools is a web application that provides NeuroData tools for managing and viewing data on NeuroData's spatial database store.

Publications

People on project

Florian Engert
Onyeka Nnaemeka
Owen Randlett
Ben Falk
Joshua Vogelstein

Funding

Sensorimotor processing, decision making, and internal states: towards a realistic multiscale circuit model of the larval zebrafish brain