Synaptomes

Data

Tools

ndviz

NeuroDataViz (ndviz) is a fork of Neuroglancer, a web tool for viewing datasets stored using NeuroData's infrastructure.

ndex

ndex allows exchange of large image volumes with NeuroData

meda
pymeda

meda implements the top 10 analyses/visualizations we recommend for any matrix valued data.

SynapseAnalysis

SynapseAnalysis (PSD) is a framework to evaluate synaptic antibodies for fluorescence array tomography (AT)

ndwebtools

ndwebtools is a web application that provides NeuroData tools for managing and viewing data on NeuroData's spatial database store.

Publications

S. J. Smith. Q & A: Array tomography. BMC Biology, (1)16:98, 2018.

G. Fran├ža and J. T. Vogelstein. Energy Clustering. arXiv:1710.09859, 2017.

A. K. Simhal et al. Probabilistic fluorescence-based synapse detection. PLoS Computational Biology, (4)13:e1005493, 2017.

A. Burette et al. Knowing a synapse when you see one. Frontiers in Neuroanatomy, 2015.

F. Collman et al. Mapping Synapses by Conjugate Light-Electron Array Tomography. Journal of Neuroscience, (14)35:5792-5807, 2015.

People on project

Anish Simhal
Bill Seeley
Daniel V. Madison
Ed Lein
Forrest Collman
Guillermo Sapiro
James Trimmer
Jesse Leigh Patsolic Assistant Research Engineer
Jonathan Ting
Kristina Micheva
Michelle Naugle
Richard Weinberg
Sharmishtaa Seshamani
Stephen Smith
Ben Falk Software Engineer
Joshua Vogelstein Director
Randal Burns Co-Founder