Synaptomes

Data

Tools

Data visualization

ndviz

NeuroDataViz (ndviz) is a web tool for viewing datasets stored using NeuroData Database Store software.

Image stack upload/download

ndex

ndex allows exchange of large image volumes with NeuroData

Matrix Exploratory Data Analysis

meda
pymeda

meda implements the top 10 analyses/visualizations we recommend for any matrix valued data.

Synapse Detection

SynapseAnalysis

SynapseAnalysis (PSD) is a framework to evaluate synaptic antibodies for fluorescence array tomography (AT)

Web frontend for data

ndwebtools

ndwebtools is a web application that provides NeuroData tools for managing and viewing data on NeuroData's spatial database store.

Publications

G. Fran├ža and J. T. Vogelstein. Energy Clustering. arXiv:1710.09859, 2017.

A. K. Simhal et al. Probabilistic fluorescence-based synapse detection. PLoS Computational Biology, (4)13:e1005493, 2017.

A. Burette et al. Knowing a synapse when you see one. Frontiers in Neuroanatomy, 2015.

F. Collman et al. Mapping Synapses by Conjugate Light-Electron Array Tomography. Journal of Neuroscience, (14)35:5792-5807, 2015.

People on project

Anish Simhal
Ben Falk Software Engineer
Bill Seeley
Daniel V. Madison
Ed Lein
Eric Perlman
Forrest Collman
Guillermo Sapiro
James Trimmer
Jesse Leigh Patsolic Assistant Research Engineer
Jonathan Ting
Joshua Vogelstein Director
Kristina Micheva
Michelle Naugle
Randal Burns Co-Founder
Richard Weinberg
Sharmishtaa Seshamani
Stephen Smith