Synaptomes

Data

Tools

meda

Matrix Exploratory Data Analysis, both in R and Python. Implements the top 10 analyses/visualizations we recommend for any matrix valued data.

ndpush

Command-line program to ingest large volume image data into the cloud using APL's BOSS spatial database.

ndviz

NeuroDataViz is a web tool for viewing datasets stored using NeuroData Database Store software.

ndwebtools

WEB application that provides NeuroData tools

SynapseAnalysis

A framework to evaluate synaptic antibodies for array tomography (AT)

Publications

G. Fran├ža and J. T. Vogelstein Energy Clustering. arXiv:1710.09859, 2017.

A. K. Simhal et al. Probabilistic fluorescence-based synapse detection. PLoS Computational Biology, (4)13:e1005493, 2017.

A. Burette et al. Knowing a synapse when you see one. Frontiers in Neuroanatomy, 2015.

F. Collman et al. Mapping Synapses by Conjugate Light-Electron Array Tomography. Journal of Neuroscience, (14)35:5792-5807, 2015.

People on project

Anish Simhal
Ben Falk Software Engineer
Bill Seeley
Daniel V. Madison
Ed Lein
Eric Perlman
Forrest Collman
Guillermo Sapiro
James Trimmer
Jesse Leigh Patsolic Assistant Research Engineer
Jonathan Ting
Joshua Vogelstein Director
Kristina Micheva
Michelle Naugle
Randal Burns Co-Founder
Richard Weinberg
Sharmishtaa Seshamani
Stephen Smith