Weiler et al. (2014)

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Ex10R55 Viz i Metadata

Example cutout
# pip install numpy tifffile cloud-volume
import numpy as np
import tifffile
from cloudvolume import CloudVolume

vol = CloudVolume(
    "s3://open-neurodata/weiler14/Ex10R55/Arc_5", mip=0, use_https=True

# load data into numpy array
cutout = vol[1536:2048, 1536:2048, 32:48]

# save cutout as TIFF
tifffile.imwrite("data.tiff", data=np.transpose(cutout))

Documentation for cloud-volume located here


N. C. Weiler, F. Collman, J. T. Vogelstein, R. Burns, and S. J. Smith. Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography. Scientific Data, 2014.

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