Wanner et al. (2016)

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wanner16 Viz i Metadata

Example cutout
# pip install numpy tifffile cloud-volume
import numpy as np
import tifffile
from cloudvolume import CloudVolume

vol = CloudVolume(
    "s3://open-neurodata/wanner16/AA201605/SBEM1", mip=0, use_https=True

# load data into numpy array
cutout = vol[7168:7680, 9216:9728, 3264:3280]

# save cutout as TIFF
tifffile.imwrite("data.tiff", data=np.transpose(cutout))

Documentation for cloud-volume located here


A. A. Wanner, C. Genoud, T. Masudi, L. Siksou, and R. W. Friedrich. Dense EM-based reconstruction of the interglomerular projectome in the zebrafish olfactory bulb. Nature Neuroscience, 2016.

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Data on this site are licensed under ODC-By v1.0 license.

Please use this DOI when citing this data: 10.7281/T1MS3QN7