Takemura et al. (2013)

The right part of the brain of a wild-type Oregon R female fly was serially sectioned into 40-nm slices. A total of 1,769 sections, traversing the medulla and downstream neuropils, were imaged at a magnification of 35,000.

Data

takemura13 Viz

Example cutout
# pip install numpy tifffile cloud-volume
import numpy as np
import tifffile
from cloudvolume import CloudVolume

vol = CloudVolume(
    "s3://open-neurodata/takemura/takemura13/image", mip=0, use_https=True
)

# load data into numpy array
cutout = vol[5632:6144, 5632:6144, 720:736]

# save cutout as TIFF
tifffile.imwrite("data.tiff", data=np.transpose(cutout))

Documentation for cloud-volume located here

Publications

S. Takemura, A. Bharioke, Z. Lu, A. Nern, S. Vitaladevuni, P. K. Rivlin, W. T. Katz, D. J. Olbris, S. M. Plaza, P. Winston, T. Zhao, J. A. Horne, R. D. Fetter, S. Takemura, K. Blazek, L. Chang, O. Ogundeyi, M. a. Saunders, V. Shapiro, C. Sigmund, G. M. Rubin, L. K. Scheffer, I. a. Meinertzhagen, and D. B. Chklovskii. A visual motion detection circuit suggested by Drosophila connectomics. Nature, 2013.

To access this data, please view the guide.

Data on this site are licensed under ODC-By v1.0 license.