Takemura et al. (2013)
The right part of the brain of a wild-type Oregon R female fly was serially sectioned into 40-nm slices. A total of 1,769 sections, traversing the medulla and downstream neuropils, were imaged at a magnification of 35,000.
# pip install numpy tifffile cloud-volume import numpy as np import tifffile from cloudvolume import CloudVolume vol = CloudVolume( "s3://open-neurodata/takemura/takemura13/image", mip=0, use_https=True ) # load data into numpy array cutout = vol[5632:6144, 5632:6144, 720:736] # save cutout as TIFF tifffile.imwrite("data.tiff", data=np.transpose(cutout))
Documentation for cloud-volume located here
S. Takemura, A. Bharioke, Z. Lu, A. Nern, S. Vitaladevuni, P. K. Rivlin, W. T. Katz, D. J. Olbris, S. M. Plaza, P. Winston, T. Zhao, J. A. Horne, R. D. Fetter, S. Takemura, K. Blazek, L. Chang, O. Ogundeyi, M. a. Saunders, V. Shapiro, C. Sigmund, G. M. Rubin, L. K. Scheffer, I. a. Meinertzhagen, and D. B. Chklovskii. A visual motion detection circuit suggested by Drosophila connectomics. Nature, 2013.