Lee et al. (2016)

Electron Microscopy data used in a study of an excitatory network in Mouse V1.


lee16 Viz i Metadata

Example cutout
# pip install numpy tifffile cloud-volume
import numpy as np
import tifffile
from cloudvolume import CloudVolume

vol = CloudVolume(
    "s3://open-neurodata/lee/lee16/image", mip=0, use_https=True

# load data into numpy array
cutout = vol[88576:89088, 83968:84480, 544:560]

# save cutout as TIFF
tifffile.imwrite("data.tiff", data=np.transpose(cutout))

Documentation for cloud-volume located here


W. A. Lee, V. Bonin, M. Reed, B. J. Graham, G. Hood, K. Glattfelder, and R. C. Reid. Anatomy and function of an excitatory network in the visual cortex. Nature, 2016.

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