Lee et al. (2016)

Electron Microscopy data used in a study of an excitatory network in Mouse V1.

Data

lee16 Viz

Example cutout
# pip install numpy tifffile cloud-volume
import numpy as np
import tifffile
from cloudvolume import CloudVolume

vol = CloudVolume(
    "s3://open-neurodata/lee/lee16/image", mip=0, use_https=True
)

# load data into numpy array
cutout = vol[88576:89088, 83968:84480, 544:560]

# save cutout as TIFF
tifffile.imwrite("data.tiff", data=np.transpose(cutout))

Documentation for cloud-volume located here

Publications

W. A. Lee, V. Bonin, M. Reed, B. J. Graham, G. Hood, K. Glattfelder, and R. C. Reid. Anatomy and function of an excitatory network in the visual cortex. Nature, 2016.

To access this data, please view the guide.

Data on this site are licensed under ODC-By v1.0 license.