Hildebrand et al. (2017)

Multi-resolution serial-section electron microscopy data set containing the anterior quarter of a 5.5 days post fertilization larval zebrafish.

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Data

Hildebrand et al. 2017 (5.5 dpf) Viz i Metadata

Example cutout
# pip install numpy tifffile cloud-volume
import numpy as np
import tifffile
from cloudvolume import CloudVolume

vol = CloudVolume(
    "s3://open-neurodata/hildebrand/130201zf142/160515_SWiFT_60nmpx", mip=0, use_https=True
)

# load data into numpy array
cutout = vol[5632:6144, 4608:5120, 10112:10128]

# save cutout as TIFF
tifffile.imwrite("data.tiff", data=np.transpose(cutout))

Documentation for cloud-volume located here

Hildebrand et al. 2017 (7 dpf) Viz i Metadata

Example cutout
# pip install numpy tifffile cloud-volume
import numpy as np
import tifffile
from cloudvolume import CloudVolume

vol = CloudVolume(
    "s3://open-neurodata/hildebrand/120809zf104/151009", mip=0, use_https=True
)

# load data into numpy array
cutout = vol[1024:1536, 512:1024, 7520:7536]

# save cutout as TIFF
tifffile.imwrite("data.tiff", data=np.transpose(cutout))

Documentation for cloud-volume located here

Publications

D. G. C. Hildebrand, M. Cicconet, R. M. Torres, W. Choi, T. M. Quan, J. Moon, A. W. Wetzel, A. Scott Champion, B. J. Graham, O. Randlett, G. S. Plummer, R. Portugues, I. H. Bianco, S. Saalfeld, A. D. Baden, K. Lillaney, R. Burns, J. T. Vogelstein, A. F. Schier, W. C. A. Lee, W. K. Jeong, J. W. Lichtman, and F. Engert. Whole-brain serial-section electron microscopy in larval zebrafish. Nature, (7654)545:345-349, 2017.

To access this data, please view the guide.

Data on this site are licensed under ODC-By v1.0 license.