Collman et al. (2015)

Conjugate electron microscopy and array tomography

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Data

collman15 Viz

Example cutout
# pip install numpy tifffile cloud-volume
import numpy as np
import tifffile
from cloudvolume import CloudVolume

vol = CloudVolume(
    "s3://open-neurodata/collman/collman15v2/EM25K", mip=0, use_https=True
)

# load data into numpy array
cutout = vol[2560:3072, 2048:2560, 0:16]

# save cutout as TIFF
tifffile.imwrite("data.tiff", data=np.transpose(cutout))

Documentation for cloud-volume located here

Publications

F. Collman, J. Buchanan, K. D. Phend, K. D. Micheva, R. J. Weinberg, and S. J. Smith. Mapping Synapses by Conjugate Light-Electron Array Tomography. Journal of Neuroscience, 2015.

To access this data, please view the guide.

Data on this site are licensed under ODC-By v1.0 license.