Bock et al. (2011)

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bock11 Viz i Metadata

Example cutout
# pip install numpy tifffile cloud-volume
import numpy as np
import tifffile
from cloudvolume import CloudVolume

vol = CloudVolume(
    "s3://open-neurodata/bock11/image", mip=0, use_https=True

# load data into numpy array
cutout = vol[65024:65536, 62464:62976, 3616:3632]

# save cutout as TIFF
tifffile.imwrite("data.tiff", data=np.transpose(cutout))

Documentation for cloud-volume located here


D. D. Bock, W. C. A. Lee, A. M. Kerlin, M. L. Andermann, G. Hood, A. W. Wetzel, S. Yurgenson, E. R. Soucy, H. S. Kim, and R. C. Reid. Network anatomy and in vivo physiology of visual cortical neurons. Nature, 2011.

n. video. Untangling the brain - by Nature Video. YouTube, 2011.

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