Bhatla et al. (2015)

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Worm #1 Viz i Metadata

1199 serial sections of the anterior pharynx of worm #1

Example cutout
# pip install numpy tifffile cloud-volume
import numpy as np
import tifffile
from cloudvolume import CloudVolume

vol = CloudVolume(
    "s3://open-neurodata/bhatla/ritaN2/image", mip=0, use_https=True

# load data into numpy array
cutout = vol[6656:7168, 7168:7680, 176:192]

# save cutout as TIFF
tifffile.imwrite("data.tiff", data=np.transpose(cutout))

Documentation for cloud-volume located here


N. Bhatla, R. Droste, S. R. Sando, A. Huang, and H. R. Horvitz. Distinct neural circuits control rhythm inhibition and spitting by the myogenic pharynx of C. elegans. Current Biology, 2015.

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Data on this site are licensed under ODC-By v1.0 license.