acardona_0111_8 i

Viz

Example cutout

# pip install numpy tifffile cloud-volume
import numpy as np
import tifffile
from cloudvolume import CloudVolume

vol = CloudVolume(
    "s3://open-neurodata/cardona/acardona_0111_8__12_03_2017/image", mip=0, use_https=True
)

# load data into numpy array
cutout = vol[14336:14848, 23040:23552, 2416:2432]

# save cutout as TIFF
tifffile.imwrite("data.tiff", data=np.transpose(cutout))

Documentation for cloud-volume located here

acardona_abd1_5 i

Viz

Example cutout

# pip install numpy tifffile cloud-volume
import numpy as np
import tifffile
from cloudvolume import CloudVolume

vol = CloudVolume(
    "s3://open-neurodata/cardona/acardona_abd1_5/image", mip=0, use_https=True
)

# load data into numpy array
cutout = vol[10752:11264, 9216:9728, 96:112]

# save cutout as TIFF
tifffile.imwrite("data.tiff", data=np.transpose(cutout))

Documentation for cloud-volume located here

M. E. Berck, A. Khandelwal, L. Claus, L. Hernandez-Nunez, G. Si, C. J. Tabone, F. Li, J. W. Truman, R. D. Fetter, M. Louis, A. D. Samuel, and A. Cardona. The wiring diagram of a glomerular olfactory system. eLife, 2016.

A. Fushiki, M. F. Zwart, H. Kohsaka, R. D. Fetter, A. Cardona, and A. Nose. A circuit mechanism for the propagation of waves of muscle contraction in Drosophila. eLife, 2016.

T. Jovanic, C. M. Schneider-Mizell, M. Shao, J. B. Masson, G. Denisov, R. D. Fetter, B. D. Mensh, J. W. Truman, A. Cardona, and M. Zlatic. Competitive Disinhibition Mediates Behavioral Choice and Sequences in Drosophila. Cell, 2016.

S. E. Macnamee, K. E. Liu, S. Gerhard, C. T. Tran, R. D. Fetter, A. Cardona, L. P. Tolbert, and L. A. Oland. Astrocytic glutamate transport regulates a Drosophila CNS synapse that lacks astrocyte ensheathment. Journal of Comparative Neurology, 2016.

P. Schlegel, M. J. Texada, A. Miroschnikow, A. Schoofs, S. Hückesfeld, M. Peters, C. M. Schneider-Mizell, H. Lacin, F. Li, R. D. Fetter, J. W. Truman, A. Cardona, and M. J. Pankratz. Synaptic transmission parallels neuromodulation in a central food-intake circuit. eLife, 2016.

M. F. Zwart, S. R. Pulver, J. W. Truman, A. Fushiki, R. D. Fetter, A. Cardona, and M. Landgraf. Selective inhibition mediates the sequential recruitment of motor pools. Neuron, 2016.

A. Kreshuk, J. Funke, A. Cardona, and F. A. Hamprecht. Who is talking to whom: Synaptic partner detection in anisotropic volumes of insect brain. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2015.

T. Ohyama, C. M. Schneider-Mizell, R. D. Fetter, J. V. Aleman, R. Franconville, M. Rivera-Alba, B. D. Mensh, K. M. Branson, J. H. Simpson, J. W. Truman, A. Cardona, and M. Zlatic. A multilevel multimodal circuit enhances action selection in Drosophila. Nature, 2015.

J. T. Vogelstein, Y. Park, T. Ohyama, R. A. Kerr, J. W. Truman, C. E. Priebe, and M. Zlatic. Discovery of brainwide neural-behavioral maps via multiscale unsupervised structure learning. Science, (6182)344:386–392, 2014.