Featured

Open-Source Contributions

  • SciPy

    quadratic_assignmet(): added FAQ, state of the art algorithm for solving quadratic assignment problem.

    multiscale_graphcorr(): added mgc, a state of the art method for hypothesis testing we developed in the lab.

  • igraph

    Added spectral clustering functionality

  • cloud-volume

    Added support for additional file types

  • C-PAC

    Added streamlined reproducible pipeline

  • neuroglancer

    Added multispectral support to enable light microscopy data use

  • render

    Added cloud support

  • boss

    Developed core functionality

Others

FlashX are big data analytics tools that perform data analytics in the form of graphs and matrices!

FlashGraph

FlashX are big data analytics tools that perform data analytics in the form of graphs and matrices!

FlashX

knorR is a highly optimized and fast library for computing k-means in parallel with accelerations for Non-Uniform Memory Access ('NUMA') architectures.

meda implements the top 10 analyses/visualizations we recommend for any matrix valued data.

oopsi is a tool for performing model-based spike train inference from calcium imaging. OOPSI has now been subsumed by CaImAn.

oopsi

SynapseAnalysis (PSD) is a framework to evaluate synaptic antibodies for fluorescence array tomography (AT)

SynapseAnalysis

Synapse detection from serial electron microscopy data. VESICLE has now been subsumed by VESICLE-CNN-2.

VESICLE